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public:clonet [2014/08/20 15:26]
davide.prandi@unitn.it
public:clonet [2017/10/30 09:44] (current)
davide.prandi@unitn.it
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-{{public:clonet_schema.png?850 | CLONET Pipeline}}+{{ public:clonet_schema.png?750  CLONET Pipeline }}  
 + 
 + 
 +=== REFERENCES === 
 + 
 +Prandi et al.: **Unraveling the clonal hierarchy of somatic genomic aberrations**. //Genome Biology// 2014, **15**:439.
  
 ---- ----
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 The Functions folder contains all the functions used by CLONET.\\ The Functions folder contains all the functions used by CLONET.\\
 The Tools folder contains R scripts to perform point mutations (PM) analysis, structural rearrangement (RR) analysis and tumor evolution path analysis.\\ The Tools folder contains R scripts to perform point mutations (PM) analysis, structural rearrangement (RR) analysis and tumor evolution path analysis.\\
 +
 +----
 +
 === REQUIREMENTS === === REQUIREMENTS ===
 CLONET requires Linux kernel >= 2.6.15. CLONET requires Linux kernel >= 2.6.15.
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 ---- ----
-=== Copyright  ===+=== COPYRIGHT  ===
 Code by Davide Prandi\\ Code by Davide Prandi\\
 Laboratory of Computational Oncology (F. Demichelis)\\ Laboratory of Computational Oncology (F. Demichelis)\\
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 === DOWNLOADS === === DOWNLOADS ===
  
-  * {{:CLONET_20140806.zip|CLONET}}+  * {{:CLONET_20140806.zip|CLONET (for backward compatibility}} 
 +  * {{:CLONET.v2.20171016.zip|CLONET v2 (version suggested)}}
   * {{:aseq-v1.1.7-linux32.tar.gz|ASEQ binaries (linux 32bit)}}   * {{:aseq-v1.1.7-linux32.tar.gz|ASEQ binaries (linux 32bit)}}
   * {{:aseq-v1.1.7-linux64.tar.gz|ASEQ binaries (linux 64bit)}}   * {{:aseq-v1.1.7-linux64.tar.gz|ASEQ binaries (linux 64bit)}}