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public:clonet [2014/08/20 15:26] davide.prandi@unitn.it |
public:clonet [2017/10/30 09:44] (current) davide.prandi@unitn.it |
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- | {{public:clonet_schema.png?850 | CLONET Pipeline}} | + | {{ public:clonet_schema.png?750 | CLONET Pipeline }} |
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+ | === REFERENCES === | ||
+ | |||
+ | Prandi et al.: **Unraveling the clonal hierarchy of somatic genomic aberrations**. //Genome Biology// 2014, **15**:439. | ||
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The Functions folder contains all the functions used by CLONET.\\ | The Functions folder contains all the functions used by CLONET.\\ | ||
The Tools folder contains R scripts to perform point mutations (PM) analysis, structural rearrangement (RR) analysis and tumor evolution path analysis.\\ | The Tools folder contains R scripts to perform point mutations (PM) analysis, structural rearrangement (RR) analysis and tumor evolution path analysis.\\ | ||
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+ | ---- | ||
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=== REQUIREMENTS === | === REQUIREMENTS === | ||
CLONET requires Linux kernel >= 2.6.15. | CLONET requires Linux kernel >= 2.6.15. | ||
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- | === Copyright === | + | === COPYRIGHT === |
Code by Davide Prandi\\ | Code by Davide Prandi\\ | ||
Laboratory of Computational Oncology (F. Demichelis)\\ | Laboratory of Computational Oncology (F. Demichelis)\\ | ||
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=== DOWNLOADS === | === DOWNLOADS === | ||
- | * {{:CLONET_20140806.zip|CLONET}} | + | * {{:CLONET_20140806.zip|CLONET (for backward compatibility}} |
+ | * {{:CLONET.v2.20171016.zip|CLONET v2 (version suggested)}} | ||
* {{:aseq-v1.1.7-linux32.tar.gz|ASEQ binaries (linux 32bit)}} | * {{:aseq-v1.1.7-linux32.tar.gz|ASEQ binaries (linux 32bit)}} | ||
* {{:aseq-v1.1.7-linux64.tar.gz|ASEQ binaries (linux 64bit)}} | * {{:aseq-v1.1.7-linux64.tar.gz|ASEQ binaries (linux 64bit)}} |