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public:aseq [2015/02/05 22:33] alessandro.romanel@unitn.it |
public:aseq [2016/10/12 22:11] (current) alessandro.romanel@unitn.it |
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| === REFERENCES === | === REFERENCES === | ||
| + | Romanel A, Lago S, Prandi D, Sboner A, Demichelis F. **ASEQ: fast allele-specific studies from next-generation sequencing data**. BMC Medical Genomics 2015. | ||
| ---- | ---- | ||
| === INSTALL === | === INSTALL === | ||
| + | |||
| + | Pre-compiled binaries are provided for Linux and Windows platforms.\\ | ||
| + | Source code compilation instructions for Linux, Windows and MacOSX platforms are provided in //source files// package (refer to INSTALL file). | ||
| === BASIC USAGE === | === BASIC USAGE === | ||
| - | === REQUIREMENTS === | + | Running ASEQ executable will list help and usage options. \\ |
| - | CLONET requires Linux kernel >= 2.6.15. | + | Detailed description of run options are listed in the //Manual// while usage examples are provided in //Examples// package (refer to README file). \\ |
| - | CLONET requires R >= 2.7 and the following packages, parallel, dgof, sets, and pso, igraph, reshape2. | + | Pre-built annotation and input files required by ASEQ are provided in //Annotation Files// package. |
| - | CLONET requires global folder names. | + | |
| - | CLONET recommends ASEQ tool to generate initial pileup analysis (binaries provided). | + | |
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| === DOWNLOADS === | === DOWNLOADS === | ||
| - | == Current version 1.1.8 == | + | == Current version 1.1.11 == |
| - | * {{:aseq-v1.1.8-linux64.tar.gz|Linux 64 bit binary}} | + | * {{:aseq-v1.1.11-linux64.tar.gz|Linux 64 bit binary}} |
| - | * {{:aseq-v1.1.8-win32.tar.gz|Windows 32 bit binary}} | + | * {{:aseq-v1.1.11-linux32.tar.gz|Linux 32 bit binary}} |
| - | * {{:aseq-v1.1.8-source.tar.gz|Source files}} | + | * {{:aseq-v1.1.11-win32.tar.gz|Windows 32 bit binary}} |
| + | * {{:aseq-v1.1.11-macosx.tar.gz|Mac OSX binary}} | ||
| + | * {{:aseq-v1.1.11-source.tar.gz|Source files}} | ||
| * {{:aseq-examples.tar.gz|Examples}} | * {{:aseq-examples.tar.gz|Examples}} | ||
| * {{:aseq-annotation-files.tar.gz|Annotation Files}} | * {{:aseq-annotation-files.tar.gz|Annotation Files}} | ||
| * {{:Manual.pdf|Manual}} | * {{:Manual.pdf|Manual}} | ||