Differences

This shows you the differences between two versions of the page.

Link to this comparison view

public:aseq [2015/02/05 22:27]
alessandro.romanel@unitn.it
public:aseq [2016/10/12 22:11] (current)
alessandro.romanel@unitn.it
Line 10: Line 10:
 ASEQ is a tool to perform gene-level allele-specific expression (ASE) analysis from paired genomic and transcriptomic NGS data without requiring paternal and maternal genome data. It offers an easy-to-use set of modes that transparently to the user takes full advantage of a built-in fast computational engine. ASEQ can be used to rapidly and reliably screen large NGS datasets for the identification of allele specific features and can be integrated in any NGS pipeline and runs on computer systems with multiple CPUs, CPUs with multiple cores or across clusters of machines.  ASEQ is a tool to perform gene-level allele-specific expression (ASE) analysis from paired genomic and transcriptomic NGS data without requiring paternal and maternal genome data. It offers an easy-to-use set of modes that transparently to the user takes full advantage of a built-in fast computational engine. ASEQ can be used to rapidly and reliably screen large NGS datasets for the identification of allele specific features and can be integrated in any NGS pipeline and runs on computer systems with multiple CPUs, CPUs with multiple cores or across clusters of machines. 
  
-==== DOWNLOADS ====+=== REFERENCES ===
  
-== Current version 1.1.8 ==+Romanel A, Lago S, Prandi D, Sboner A, Demichelis F**ASEQ: fast allele-specific studies from next-generation sequencing data**. BMC Medical Genomics 2015
  
-  * {{:aseq-v1.1.8-linux64.tar.gz|Linux 64 bit binary}} +---- 
-  * {{:aseq-v1.1.8-win32.tar.gz|Windows 32 bit binary}} + 
-  * {{:aseq-v1.1.8-source.tar.gz|Source files}}+=== INSTALL === 
 + 
 +Pre-compiled binaries are provided for Linux and Windows platforms.\\ 
 +Source code compilation instructions for Linux, Windows and MacOSX platforms are provided in //source files// package (refer to INSTALL file). 
 + 
 +=== BASIC USAGE === 
 + 
 +Running ASEQ executable will list help and usage options. \\ 
 +Detailed description of run options are listed in the //Manual// while usage examples are provided in //Examples// package (refer to README file). \\ 
 +Pre-built annotation and input files required by ASEQ are provided in //Annotation Files// package. 
 + 
 +---- 
 +=== COPYRIGHT  === 
 +Code by Alessandro Romanel\\ 
 +Laboratory of Computational Oncology (F. Demichelis)\\ 
 +Centre for Integrative Biology, University of Trento, Italy\\ 
 +email contacts: romanel@science.unitn.it; demichelis@science.unitn.it\\ 
 + 
 +ASEQ is distributed under the MIT Licence. 
 + 
 +=== DOWNLOADS === 
 + 
 +== Current version 1.1.11 == 
 + 
 +  * {{:aseq-v1.1.11-linux64.tar.gz|Linux 64 bit binary}} 
 +  * {{:aseq-v1.1.11-linux32.tar.gz|Linux 32 bit binary}} 
 +  * {{:aseq-v1.1.11-win32.tar.gz|Windows 32 bit binary}} 
 +  * {{:aseq-v1.1.11-macosx.tar.gz|Mac OSX binary}} 
 +  * {{:aseq-v1.1.11-source.tar.gz|Source files}}
   * {{:aseq-examples.tar.gz|Examples}}   * {{:aseq-examples.tar.gz|Examples}}
   * {{:aseq-annotation-files.tar.gz|Annotation Files}}   * {{:aseq-annotation-files.tar.gz|Annotation Files}}
   * {{:Manual.pdf|Manual}}   * {{:Manual.pdf|Manual}}